Inheritance diagram for aspect::GeometryModel::TwoMergedChunks< dim >:

Public Member Functions
void	initialize () override

void	create_coarse_mesh (parallel::distributed::Triangulation< dim > &coarse_grid) const override

std::set< types::boundary_id >	get_used_boundary_indicators () const override

std::map< std::string, types::boundary_id >	get_symbolic_boundary_names_map () const override

double	length_scale () const override

double	depth (const Point< dim > &position) const override

double	height_above_reference_surface (const Point< dim > &position) const override

Point< dim >	representative_point (const double depth) const override

virtual double	west_longitude () const

virtual double	east_longitude () const

virtual double	longitude_range () const

virtual double	south_latitude () const

virtual double	north_latitude () const

virtual double	latitude_range () const

double	maximal_depth () const override

virtual double	inner_radius () const

virtual double	outer_radius () const

bool	has_curved_elements () const override

bool	point_is_in_domain (const Point< dim > &point) const override

aspect::Utilities::Coordinates::CoordinateSystem	natural_coordinate_system () const override

std::array< double, dim >	cartesian_to_natural_coordinates (const Point< dim > &position) const override

Point< dim >	natural_to_cartesian_coordinates (const std::array< double, dim > &position) const override

void	parse_parameters (ParameterHandler &prm) override

Public Member Functions inherited from aspect::GeometryModel::Interface< dim >
Utilities::NaturalCoordinate< dim >	cartesian_to_other_coordinates (const Point< dim > &position, const Utilities::Coordinates::CoordinateSystem &coordinate_system) const

types::boundary_id	translate_symbolic_boundary_name_to_id (const std::string &name) const

std::vector< types::boundary_id >	translate_symbolic_boundary_names_to_ids (const std::vector< std::string > &names) const

std::string	translate_id_to_symbol_name (const types::boundary_id boundary_id) const

virtual std::set< std::pair< std::pair< types::boundary_id, types::boundary_id >, unsigned int > >	get_periodic_boundary_pairs () const

virtual void	adjust_positions_for_periodicity (Point< dim > &position, const ArrayView< Point< dim >> &connected_positions={}, const ArrayView< Tensor< 1, dim >> &connected_velocities={}) const

virtual void	make_periodicity_constraints (const DoFHandler< dim > &dof_handler, AffineConstraints< double > &constraints) const

Public Member Functions inherited from aspect::Plugins::InterfaceBase
virtual	~InterfaceBase ()=default

virtual void	update ()

Public Member Functions inherited from aspect::SimulatorAccess< dim >
	SimulatorAccess ()

	SimulatorAccess (const Simulator< dim > &simulator_object)

virtual	~SimulatorAccess ()=default

virtual void	initialize_simulator (const Simulator< dim > &simulator_object)

const Introspection< dim > &	introspection () const

const Simulator< dim > &	get_simulator () const

const Parameters< dim > &	get_parameters () const

SimulatorSignals< dim > &	get_signals () const

MPI_Comm	get_mpi_communicator () const

TimerOutput &	get_computing_timer () const

const ConditionalOStream &	get_pcout () const

double	get_time () const

double	get_timestep () const

double	get_old_timestep () const

unsigned int	get_timestep_number () const

const TimeStepping::Manager< dim > &	get_timestepping_manager () const

unsigned int	get_nonlinear_iteration () const

const parallel::distributed::Triangulation< dim > &	get_triangulation () const

double	get_volume () const

const Mapping< dim > &	get_mapping () const

std::string	get_output_directory () const

bool	include_adiabatic_heating () const

bool	include_latent_heat () const

bool	include_melt_transport () const

int	get_stokes_velocity_degree () const

double	get_adiabatic_surface_temperature () const

double	get_surface_pressure () const

bool	convert_output_to_years () const

unsigned int	get_pre_refinement_step () const

unsigned int	n_compositional_fields () const

double	get_end_time () const

void	get_refinement_criteria (Vector< float > &estimated_error_per_cell) const

void	get_artificial_viscosity (Vector< float > &viscosity_per_cell, const bool skip_interior_cells=false) const

void	get_artificial_viscosity_composition (Vector< float > &viscosity_per_cell, const unsigned int compositional_variable) const

const LinearAlgebra::BlockVector &	get_current_linearization_point () const

const LinearAlgebra::BlockVector &	get_solution () const

const LinearAlgebra::BlockVector &	get_old_solution () const

const LinearAlgebra::BlockVector &	get_old_old_solution () const

const LinearAlgebra::BlockVector &	get_reaction_vector () const

const LinearAlgebra::BlockVector &	get_mesh_velocity () const

const DoFHandler< dim > &	get_dof_handler () const

const FiniteElement< dim > &	get_fe () const

const LinearAlgebra::BlockSparseMatrix &	get_system_matrix () const

const LinearAlgebra::BlockSparseMatrix &	get_system_preconditioner_matrix () const

const MaterialModel::Interface< dim > &	get_material_model () const

const GravityModel::Interface< dim > &	get_gravity_model () const

const InitialTopographyModel::Interface< dim > &	get_initial_topography_model () const

const GeometryModel::Interface< dim > &	get_geometry_model () const

const AdiabaticConditions::Interface< dim > &	get_adiabatic_conditions () const

bool	has_boundary_temperature () const

const BoundaryTemperature::Manager< dim > &	get_boundary_temperature_manager () const

const BoundaryHeatFlux::Interface< dim > &	get_boundary_heat_flux () const

bool	has_boundary_composition () const

const BoundaryComposition::Manager< dim > &	get_boundary_composition_manager () const

const BoundaryTraction::Manager< dim > &	get_boundary_traction_manager () const

std::shared_ptr< const InitialTemperature::Manager< dim > >	get_initial_temperature_manager_pointer () const

const InitialTemperature::Manager< dim > &	get_initial_temperature_manager () const

std::shared_ptr< const InitialComposition::Manager< dim > >	get_initial_composition_manager_pointer () const

const InitialComposition::Manager< dim > &	get_initial_composition_manager () const

const std::set< types::boundary_id > &	get_fixed_temperature_boundary_indicators () const

const std::set< types::boundary_id > &	get_fixed_heat_flux_boundary_indicators () const

const std::set< types::boundary_id > &	get_fixed_composition_boundary_indicators () const

const std::set< types::boundary_id > &	get_mesh_deformation_boundary_indicators () const

const BoundaryVelocity::Manager< dim > &	get_boundary_velocity_manager () const

const HeatingModel::Manager< dim > &	get_heating_model_manager () const

const MeshRefinement::Manager< dim > &	get_mesh_refinement_manager () const

const MeltHandler< dim > &	get_melt_handler () const

const VolumeOfFluidHandler< dim > &	get_volume_of_fluid_handler () const

const NewtonHandler< dim > &	get_newton_handler () const

const MeshDeformation::MeshDeformationHandler< dim > &	get_mesh_deformation_handler () const

const LateralAveraging< dim > &	get_lateral_averaging () const

const AffineConstraints< double > &	get_current_constraints () const

bool	simulator_is_past_initialization () const

double	get_pressure_scaling () const

bool	pressure_rhs_needs_compatibility_modification () const

bool	model_has_prescribed_stokes_solution () const

TableHandler &	get_statistics_object () const

const Postprocess::Manager< dim > &	get_postprocess_manager () const

unsigned int	n_particle_managers () const

const Particle::Manager< dim > &	get_particle_manager (const unsigned int particle_manager_index) const

Particle::Manager< dim > &	get_particle_manager (const unsigned int particle_manager_index)

bool	is_stokes_matrix_free ()

const StokesMatrixFreeHandler< dim > &	get_stokes_matrix_free () const

RotationProperties< dim >	compute_net_angular_momentum (const bool use_constant_density, const LinearAlgebra::BlockVector &solution, const bool limit_to_top_faces=false) const

Static Public Member Functions
static void	declare_parameters (ParameterHandler &prm)

Static Public Member Functions inherited from aspect::Plugins::InterfaceBase
static void	declare_parameters (ParameterHandler &prm)

Static Public Member Functions inherited from aspect::SimulatorAccess< dim >
static void	get_composition_values_at_q_point (const std::vector< std::vector< double >> &composition_values, const unsigned int q, std::vector< double > &composition_values_at_q_point)

Private Member Functions
void	set_boundary_indicators (parallel::distributed::Triangulation< dim > &triangulation) const

Private Attributes
bool	use_merged_grids

Point< dim >	point1

Point< dim >	point2

Point< dim >	point3

Point< dim >	point4

std::array< unsigned int, dim >	lower_repetitions

std::array< unsigned int, dim >	upper_repetitions

std::unique_ptr< const internal::ChunkGeometry< dim > >	manifold

Static Private Attributes
static constexpr types::manifold_id	my_manifold_id = 15

Detailed Description

template<int dim>
class aspect::GeometryModel::TwoMergedChunks< dim >

A geometry model class that describes a chunk of a spherical shell, but with two boundary indicators per side boundary. This allows for specifying two different types of boundary conditions on the side boundaries, for example prescribed plate motions along the edge of the lithosphere and an open boundary underneath. In 2D, this class simulates a sector with inner and outer radius, and minimum and maximum longitude. Longitude increases anticlockwise from the positive x-axis, as per the mathematical convention of phi. In 3D, the class simulates a chunk of a sphere, bounded by arbitrary lines of longitude, latitude and radius. Boundary indicator names are lowerwest, upperwest, lowereast, uppereast, lowersouth, uppersouth, lowernorth, uppernorth, bottom and top.

The parameters that describe this geometry and that are read from the input file are the inner, outer and middle boundary radius of the shell, the minimum and maximum longitude, minimum and maximum longitude, and the number of cells initialized in each dimension. In the radial direction, this number should be specified for both the lower and the upper part of the chunk (with their boundary lying at the middle boundary radius).

Initial topography can be added through a radial displacement of the mesh nodes.

Definition at line 62 of file two_merged_chunks.h.

Member Function Documentation

§ initialize()

template<int dim>

void aspect::GeometryModel::TwoMergedChunks< dim >::initialize ( )

overridevirtual

Initialization function. This function is called once at the beginning of the program after parse_parameters is run and after the SimulatorAccess (if applicable) is initialized. This function calls the initialize function of the manifold with a pointer to the initial topography model obtained from SimulatorAccess.

Reimplemented from aspect::Plugins::InterfaceBase.

§ create_coarse_mesh()

template<int dim>

void aspect::GeometryModel::TwoMergedChunks< dim >::create_coarse_mesh ( parallel::distributed::Triangulation< dim > & coarse_grid ) const

overridevirtual

Generate a coarse mesh for the geometry described by this class.

Implements aspect::GeometryModel::Interface< dim >.

§ get_used_boundary_indicators()

template<int dim>

std::set<types::boundary_id> aspect::GeometryModel::TwoMergedChunks< dim >::get_used_boundary_indicators ( ) const

overridevirtual

Return the set of boundary indicators that are used by this model. This information is used to determine what boundary indicators can be used in the input file.

The chunk model uses boundary indicators zero through 2*dim+2*(dim-1)-1, with the first two being the faces perpendicular to the radius of the shell, the next four along lines of longitude and, in 3d, the next four along lines of latitude.

Implements aspect::GeometryModel::Interface< dim >.

§ get_symbolic_boundary_names_map()

template<int dim>

std::map<std::string,types::boundary_id> aspect::GeometryModel::TwoMergedChunks< dim >::get_symbolic_boundary_names_map ( ) const

overridevirtual

Return a mapping from symbolic names of each part of the boundary to the corresponding boundary indicator. This allows users to specify names, not just numbers in their input files when describing which parts of the boundary have to satisfy which boundary conditions.

Reimplemented from aspect::GeometryModel::Interface< dim >.

§ length_scale()

template<int dim>

double aspect::GeometryModel::TwoMergedChunks< dim >::length_scale ( ) const

overridevirtual

Return the typical length scale one would expect of features in this geometry, assuming realistic parameters.

As described in the first ASPECT paper, a length scale of 10km = 1e4m works well for the pressure scaling for earth sized spherical shells. use a length scale that yields this value for the R0,R1 corresponding to earth but otherwise scales like (R1-R0)

Implements aspect::GeometryModel::Interface< dim >.

§ depth()

template<int dim>

double aspect::GeometryModel::TwoMergedChunks< dim >::depth ( const Point< dim > & position ) const

overridevirtual

Return the depth that corresponds to the given position. The documentation of the base class (see GeometryModel::Interface::depth()) describes in detail how "depth" is interpreted in general.

Computing a depth requires a geometry model to define a "vertical" direction. The current class considers the radial vector away from the origin as vertical and considers the "top" boundary as the surface. In almost all cases one will use a gravity model that also matches these definitions.

Implements aspect::GeometryModel::Interface< dim >.

§ height_above_reference_surface()

template<int dim>

double aspect::GeometryModel::TwoMergedChunks< dim >::height_above_reference_surface ( const Point< dim > & position ) const

overridevirtual

Return the height of the given position relative to the outer radius.

Implements aspect::GeometryModel::Interface< dim >.

§ representative_point()

template<int dim>

Point<dim> aspect::GeometryModel::TwoMergedChunks< dim >::representative_point ( const double depth ) const

overridevirtual

Returns a representative point for a given depth. Such a point must lie inside the domain for sure (assuming the given depth is valid), but it is not important where exactly in the domain it is. A good choice would be on a middle axis, for example.

The function is used, for example, in computing an initial adiabatic profile. For this, we need to be able to query the density as a function of (adiabatic) pressure and temperature. However, the functions returning the density from the material model also depend on location. Since we are interested only in computing a depth-dependent adiabatic profile without lateral variation, we need to be able to query the density at "representative points" at given depths, without caring too much where exactly that is – but at points that we know for sure are inside the domain.

Implements aspect::GeometryModel::Interface< dim >.

§ west_longitude()

template<int dim>

virtual double aspect::GeometryModel::TwoMergedChunks< dim >::west_longitude ( ) const

virtual

Return the longitude at the western edge of the chunk measured in radians.

§ east_longitude()

template<int dim>

virtual double aspect::GeometryModel::TwoMergedChunks< dim >::east_longitude ( ) const

virtual

Return the longitude at the eastern edge of the chunk measured in radians.

§ longitude_range()

template<int dim>

virtual double aspect::GeometryModel::TwoMergedChunks< dim >::longitude_range ( ) const

virtual

Return the longitude range of the chunk measured in radians.

§ south_latitude()

template<int dim>

virtual double aspect::GeometryModel::TwoMergedChunks< dim >::south_latitude ( ) const

virtual

Return the latitude at the southern edge of the chunk measured in radians from the equator.

§ north_latitude()

template<int dim>

virtual double aspect::GeometryModel::TwoMergedChunks< dim >::north_latitude ( ) const

virtual

Return the latitude at the northern edge of the chunk measured in radians from the equator.

§ latitude_range()

template<int dim>

virtual double aspect::GeometryModel::TwoMergedChunks< dim >::latitude_range ( ) const

virtual

Return the latitude range of the chunk measured in radians

§ maximal_depth()

template<int dim>

double aspect::GeometryModel::TwoMergedChunks< dim >::maximal_depth ( ) const

overridevirtual

Return the maximum depth from the surface of the model measured in meters.

Implements aspect::GeometryModel::Interface< dim >.

§ inner_radius()

template<int dim>

virtual double aspect::GeometryModel::TwoMergedChunks< dim >::inner_radius ( ) const

virtual

Return the inner radius of the chunk measured in meters.

§ outer_radius()

template<int dim>

virtual double aspect::GeometryModel::TwoMergedChunks< dim >::outer_radius ( ) const

virtual

Return the outer radius of the chunk measured in meters.

§ has_curved_elements()

template<int dim>

bool aspect::GeometryModel::TwoMergedChunks< dim >::has_curved_elements ( ) const

overridevirtual

If true, the geometry contains cells with boundaries that are not straight and have a deal.II boundary object attached to it. If the return value is false, certain operation can be optimized.The default implementation of this function will return true.

A chunk has curved boundaries and cells, so return true.

Reimplemented from aspect::GeometryModel::Interface< dim >.

§ point_is_in_domain()

template<int dim>

bool aspect::GeometryModel::TwoMergedChunks< dim >::point_is_in_domain ( const Point< dim > & point ) const

overridevirtual

Return whether the given point lies within the domain specified by the geometry. This function does not take into account initial or dynamic surface topography.

Implements aspect::GeometryModel::Interface< dim >.

§ natural_coordinate_system()

template<int dim>

aspect::Utilities::Coordinates::CoordinateSystem aspect::GeometryModel::TwoMergedChunks< dim >::natural_coordinate_system ( ) const

overridevirtual

Returns what the natural coordinate system for this geometry model is, which for a chunk is Spherical.

Implements aspect::GeometryModel::Interface< dim >.

§ cartesian_to_natural_coordinates()

template<int dim>

std::array<double,dim> aspect::GeometryModel::TwoMergedChunks< dim >::cartesian_to_natural_coordinates ( const Point< dim > & position ) const

overridevirtual

Takes the Cartesian points (x,z or x,y,z) and returns standardized coordinates which are most 'natural' to the geometry model. For a chunk this is (radius, longitude) in 2d and (radius, longitude, latitude) in 3d.

Reimplemented from aspect::GeometryModel::Interface< dim >.

§ natural_to_cartesian_coordinates()

template<int dim>

Point<dim> aspect::GeometryModel::TwoMergedChunks< dim >::natural_to_cartesian_coordinates ( const std::array< double, dim > & position ) const

overridevirtual

Undoes the action of cartesian_to_natural_coordinates, and turns the coordinate system which is most 'natural' to the geometry model into Cartesian coordinates.

Reimplemented from aspect::GeometryModel::Interface< dim >.

§ declare_parameters()

template<int dim>

static void aspect::GeometryModel::TwoMergedChunks< dim >::declare_parameters ( ParameterHandler & prm )

static

Declare the parameters this class takes through input files.

§ parse_parameters()

template<int dim>

void aspect::GeometryModel::TwoMergedChunks< dim >::parse_parameters ( ParameterHandler & prm )

overridevirtual

Read the parameters this class declares from the parameter file.

Reimplemented from aspect::Plugins::InterfaceBase.

§ set_boundary_indicators()

template<int dim>

void aspect::GeometryModel::TwoMergedChunks< dim >::set_boundary_indicators ( parallel::distributed::Triangulation< dim > & triangulation ) const

private

Bind boundary indicators to child cells after each mesh refinement round.

Member Data Documentation

§ use_merged_grids

template<int dim>

bool aspect::GeometryModel::TwoMergedChunks< dim >::use_merged_grids

private

Whether to make the grid by gluing together two chunks, or just use one chunk to make the grid. Using two grids glued together is a safer option, since it forces the boundary conditions to be always applied to the same depth, but one unified grid allows for a more flexible usage of the adaptive refinement.

Definition at line 258 of file two_merged_chunks.h.

§ point1

template<int dim>

Point<dim> aspect::GeometryModel::TwoMergedChunks< dim >::point1

private

Minimum longitude-depth (2D) or longitude-latitude-depth (3D) point of the entire merged chunk.

Definition at line 265 of file two_merged_chunks.h.

§ point2

template<int dim>

Point<dim> aspect::GeometryModel::TwoMergedChunks< dim >::point2

private

Maximum longitude-depth (2D) or longitude-latitude-depth (3D) point of the entire merged chunk.

Definition at line 272 of file two_merged_chunks.h.

§ point3

template<int dim>

Point<dim> aspect::GeometryModel::TwoMergedChunks< dim >::point3

private

Minimum longitude-depth (2D) or longitude-latitude-depth (3D) point for the upper chunk.

Definition at line 279 of file two_merged_chunks.h.

§ point4

template<int dim>

Point<dim> aspect::GeometryModel::TwoMergedChunks< dim >::point4

private

Maximum longitude-depth (2D) or longitude-latitude-depth (3D) point for the lower chunk.

Definition at line 286 of file two_merged_chunks.h.

§ lower_repetitions

template<int dim>

std::array<unsigned int, dim> aspect::GeometryModel::TwoMergedChunks< dim >::lower_repetitions

private

The number of cells in each coordinate direction for the lower and upper chunk.

Definition at line 292 of file two_merged_chunks.h.

§ upper_repetitions

template<int dim>

std::array<unsigned int, dim> aspect::GeometryModel::TwoMergedChunks< dim >::upper_repetitions

private

Definition at line 293 of file two_merged_chunks.h.

§ manifold

template<int dim>

std::unique_ptr<const internal::ChunkGeometry<dim> > aspect::GeometryModel::TwoMergedChunks< dim >::manifold

private

An object that describes the geometry. This pointer is initialized in the initialize() function, and serves as the manifold object that the triangulation is later given in create_coarse_mesh() where the triangulation clones it.

The object is marked as 'const' to make it clear that it should not be modified once created. That is because the triangulation copies it, and modifying the current object will not have any impact on the manifold used by the triangulation.

Definition at line 306 of file two_merged_chunks.h.

§ my_manifold_id

template<int dim>

constexpr types::manifold_id aspect::GeometryModel::TwoMergedChunks< dim >::my_manifold_id = 15

staticprivate

Give a symbolic name to the manifold id to be used by this class.

Definition at line 311 of file two_merged_chunks.h.

The documentation for this class was generated from the following file:

/home/bob/source/include/aspect/geometry_model/two_merged_chunks.h

Public Member Functions

Static Public Member Functions

Private Member Functions

Private Attributes

Static Private Attributes

Detailed Description

template<int dim> class aspect::GeometryModel::TwoMergedChunks< dim >

Member Function Documentation

§ initialize()

§ create_coarse_mesh()

§ get_used_boundary_indicators()

§ get_symbolic_boundary_names_map()

§ length_scale()

§ depth()

§ height_above_reference_surface()

§ representative_point()

§ west_longitude()

§ east_longitude()

§ longitude_range()

§ south_latitude()

§ north_latitude()

§ latitude_range()

§ maximal_depth()

§ inner_radius()

§ outer_radius()

§ has_curved_elements()

§ point_is_in_domain()

§ natural_coordinate_system()

§ cartesian_to_natural_coordinates()

§ natural_to_cartesian_coordinates()

§ declare_parameters()

§ parse_parameters()

§ set_boundary_indicators()

Member Data Documentation

§ use_merged_grids

§ point1

§ point2

§ point3

§ point4

§ lower_repetitions

§ upper_repetitions

§ manifold

§ my_manifold_id

template<int dim>
class aspect::GeometryModel::TwoMergedChunks< dim >