Inheritance diagram for aspect::GeometryModel::TwoMergedBoxes< dim >:

Public Member Functions
void	create_coarse_mesh (parallel::distributed::Triangulation< dim > &coarse_grid) const override

Point< dim >	get_extents () const

Point< dim >	get_origin () const

double	length_scale () const override

double	depth (const Point< dim > &position) const override

double	height_above_reference_surface (const Point< dim > &position) const override

Point< dim >	representative_point (const double depth) const override

double	maximal_depth () const override

std::set< types::boundary_id >	get_used_boundary_indicators () const override

std::map< std::string, types::boundary_id >	get_symbolic_boundary_names_map () const override

std::set< std::pair< std::pair< types::boundary_id, types::boundary_id >, unsigned int > >	get_periodic_boundary_pairs () const override

void	adjust_positions_for_periodicity (Point< dim > &position, const ArrayView< Point< dim >> &connected_positions={}, const ArrayView< Tensor< 1, dim >> &connected_velocities={}) const override

bool	has_curved_elements () const override

bool	point_is_in_domain (const Point< dim > &point) const override

aspect::Utilities::Coordinates::CoordinateSystem	natural_coordinate_system () const override

std::array< double, dim >	cartesian_to_natural_coordinates (const Point< dim > &position) const override

Point< dim >	natural_to_cartesian_coordinates (const std::array< double, dim > &position) const override

void	parse_parameters (ParameterHandler &prm) override

Public Member Functions inherited from aspect::GeometryModel::Interface< dim >
virtual	~Interface ()=default

virtual void	initialize ()

Utilities::NaturalCoordinate< dim >	cartesian_to_other_coordinates (const Point< dim > &position, const Utilities::Coordinates::CoordinateSystem &coordinate_system) const

types::boundary_id	translate_symbolic_boundary_name_to_id (const std::string &name) const

std::vector< types::boundary_id >	translate_symbolic_boundary_names_to_ids (const std::vector< std::string > &names) const

std::string	translate_id_to_symbol_name (const types::boundary_id boundary_id) const

virtual void	make_periodicity_constraints (const DoFHandler< dim > &dof_handler, AffineConstraints< double > &constraints) const

Public Member Functions inherited from aspect::SimulatorAccess< dim >
	SimulatorAccess ()

	SimulatorAccess (const Simulator< dim > &simulator_object)

virtual	~SimulatorAccess ()=default

virtual void	initialize_simulator (const Simulator< dim > &simulator_object)

const Introspection< dim > &	introspection () const

const Simulator< dim > &	get_simulator () const

const Parameters< dim > &	get_parameters () const

SimulatorSignals< dim > &	get_signals () const

MPI_Comm	get_mpi_communicator () const

TimerOutput &	get_computing_timer () const

const ConditionalOStream &	get_pcout () const

double	get_time () const

double	get_timestep () const

double	get_old_timestep () const

unsigned int	get_timestep_number () const

const TimeStepping::Manager< dim > &	get_timestepping_manager () const

unsigned int	get_nonlinear_iteration () const

const parallel::distributed::Triangulation< dim > &	get_triangulation () const

double	get_volume () const

const Mapping< dim > &	get_mapping () const

std::string	get_output_directory () const

bool	include_adiabatic_heating () const

bool	include_latent_heat () const

bool	include_melt_transport () const

int	get_stokes_velocity_degree () const

double	get_adiabatic_surface_temperature () const

double	get_surface_pressure () const

bool	convert_output_to_years () const

unsigned int	get_pre_refinement_step () const

unsigned int	n_compositional_fields () const

double	get_end_time () const

void	get_refinement_criteria (Vector< float > &estimated_error_per_cell) const

void	get_artificial_viscosity (Vector< float > &viscosity_per_cell, const bool skip_interior_cells=false) const

void	get_artificial_viscosity_composition (Vector< float > &viscosity_per_cell, const unsigned int compositional_variable) const

const LinearAlgebra::BlockVector &	get_current_linearization_point () const

const LinearAlgebra::BlockVector &	get_solution () const

const LinearAlgebra::BlockVector &	get_old_solution () const

const LinearAlgebra::BlockVector &	get_old_old_solution () const

const LinearAlgebra::BlockVector &	get_reaction_vector () const

const LinearAlgebra::BlockVector &	get_mesh_velocity () const

const DoFHandler< dim > &	get_dof_handler () const

const FiniteElement< dim > &	get_fe () const

const LinearAlgebra::BlockSparseMatrix &	get_system_matrix () const

const LinearAlgebra::BlockSparseMatrix &	get_system_preconditioner_matrix () const

const MaterialModel::Interface< dim > &	get_material_model () const

const GravityModel::Interface< dim > &	get_gravity_model () const

const InitialTopographyModel::Interface< dim > &	get_initial_topography_model () const

const GeometryModel::Interface< dim > &	get_geometry_model () const

const AdiabaticConditions::Interface< dim > &	get_adiabatic_conditions () const

bool	has_boundary_temperature () const

const BoundaryTemperature::Manager< dim > &	get_boundary_temperature_manager () const

const BoundaryHeatFlux::Interface< dim > &	get_boundary_heat_flux () const

bool	has_boundary_composition () const

const BoundaryComposition::Manager< dim > &	get_boundary_composition_manager () const

const BoundaryTraction::Manager< dim > &	get_boundary_traction_manager () const

std::shared_ptr< const InitialTemperature::Manager< dim > >	get_initial_temperature_manager_pointer () const

const InitialTemperature::Manager< dim > &	get_initial_temperature_manager () const

std::shared_ptr< const InitialComposition::Manager< dim > >	get_initial_composition_manager_pointer () const

const InitialComposition::Manager< dim > &	get_initial_composition_manager () const

const std::set< types::boundary_id > &	get_fixed_temperature_boundary_indicators () const

const std::set< types::boundary_id > &	get_fixed_heat_flux_boundary_indicators () const

const std::set< types::boundary_id > &	get_fixed_composition_boundary_indicators () const

const std::set< types::boundary_id > &	get_mesh_deformation_boundary_indicators () const

const BoundaryVelocity::Manager< dim > &	get_boundary_velocity_manager () const

const HeatingModel::Manager< dim > &	get_heating_model_manager () const

const MeshRefinement::Manager< dim > &	get_mesh_refinement_manager () const

const MeltHandler< dim > &	get_melt_handler () const

const VolumeOfFluidHandler< dim > &	get_volume_of_fluid_handler () const

const NewtonHandler< dim > &	get_newton_handler () const

const MeshDeformation::MeshDeformationHandler< dim > &	get_mesh_deformation_handler () const

const LateralAveraging< dim > &	get_lateral_averaging () const

const AffineConstraints< double > &	get_current_constraints () const

bool	simulator_is_past_initialization () const

double	get_pressure_scaling () const

bool	pressure_rhs_needs_compatibility_modification () const

bool	model_has_prescribed_stokes_solution () const

TableHandler &	get_statistics_object () const

const Postprocess::Manager< dim > &	get_postprocess_manager () const

const Particle::World< dim > &	get_particle_world () const

Particle::World< dim > &	get_particle_world ()

bool	is_stokes_matrix_free ()

const StokesMatrixFreeHandler< dim > &	get_stokes_matrix_free () const

RotationProperties< dim >	compute_net_angular_momentum (const bool use_constant_density, const LinearAlgebra::BlockVector &solution, const bool limit_to_top_faces=false) const

Static Public Member Functions
static void	declare_parameters (ParameterHandler &prm)

Static Public Member Functions inherited from aspect::GeometryModel::Interface< dim >
static void	declare_parameters (ParameterHandler &prm)

Static Public Member Functions inherited from aspect::SimulatorAccess< dim >
static void	get_composition_values_at_q_point (const std::vector< std::vector< double >> &composition_values, const unsigned int q, std::vector< double > &composition_values_at_q_point)

Private Member Functions
void	set_boundary_indicators (parallel::distributed::Triangulation< dim > &triangulation) const

Private Attributes
bool	use_merged_grids

Point< dim >	extents

Point< dim >	lower_extents

Point< dim >	lower_box_origin

Point< dim >	upper_extents

Point< dim >	upper_box_origin

bool	periodic [dim+dim-1]

std::array< unsigned int, dim >	lower_repetitions

std::array< unsigned int, dim >	upper_repetitions

double	height_lith

Detailed Description

template<int dim>
class aspect::GeometryModel::TwoMergedBoxes< dim >

A class that describes a box geometry of certain width, height, and depth (in 3d) and adds two (four in 3D) additional boundary indicators for the lithospheric part of the vertical boundaries.

Definition at line 40 of file two_merged_boxes.h.

Member Function Documentation

§ create_coarse_mesh()

template<int dim>

void aspect::GeometryModel::TwoMergedBoxes< dim >::create_coarse_mesh ( parallel::distributed::Triangulation< dim > & coarse_grid ) const

overridevirtual

Generate a coarse mesh for the geometry described by this class.

Implements aspect::GeometryModel::Interface< dim >.

§ get_extents()

template<int dim>

Point<dim> aspect::GeometryModel::TwoMergedBoxes< dim >::get_extents ( ) const

Return a point that denotes the size of the box in each dimension of the domain.

§ get_origin()

template<int dim>

Point<dim> aspect::GeometryModel::TwoMergedBoxes< dim >::get_origin ( ) const

Return a point that denotes the lower left corner of the box domain.

§ length_scale()

template<int dim>

double aspect::GeometryModel::TwoMergedBoxes< dim >::length_scale ( ) const

overridevirtual

Return the typical length scale one would expect of features in this geometry, assuming realistic parameters.

We return 1/100th of the X extent of the box.

Implements aspect::GeometryModel::Interface< dim >.

§ depth()

template<int dim>

double aspect::GeometryModel::TwoMergedBoxes< dim >::depth ( const Point< dim > & position ) const

overridevirtual

Return the depth that corresponds to the given position. The documentation of the base class (see GeometryModel::Interface::depth()) describes in detail how "depth" is interpreted in general.

Computing a depth requires a geometry model to define a "vertical" direction. The current class considers the \((0,1)^T\) vector in 2d (and the \((0,0,1)^T\) vector in 3d) as vertical and considers the "top" boundary as the "surface". In almost all cases one will use a gravity model that also matches these definitions.

Implements aspect::GeometryModel::Interface< dim >.

§ height_above_reference_surface()

template<int dim>

double aspect::GeometryModel::TwoMergedBoxes< dim >::height_above_reference_surface ( const Point< dim > & position ) const

overridevirtual

Return the height of the given position relative to the initial box height.

Implements aspect::GeometryModel::Interface< dim >.

§ representative_point()

template<int dim>

Point<dim> aspect::GeometryModel::TwoMergedBoxes< dim >::representative_point ( const double depth ) const

overridevirtual

Returns a representative point for a given depth. Such a point must lie inside the domain for sure (assuming the given depth is valid), but it is not important where exactly in the domain it is. A good choice would be on a middle axis, for example.

The function is used, for example, in computing an initial adiabatic profile. For this, we need to be able to query the density as a function of (adiabatic) pressure and temperature. However, the functions returning the density from the material model also depend on location. Since we are interested only in computing a depth-dependent adiabatic profile without lateral variation, we need to be able to query the density at "representative points" at given depths, without caring too much where exactly that is – but at points that we know for sure are inside the domain.

Implements aspect::GeometryModel::Interface< dim >.

§ maximal_depth()

template<int dim>

double aspect::GeometryModel::TwoMergedBoxes< dim >::maximal_depth ( ) const

overridevirtual

Returns the maximal depth of this geometry. For a definition of how "depth" is to be interpreted, see the documentation of the depth() member function. In particular, the maximal depth of a geometry model only represents the depth computed with regard to some reference configuration, ignoring any dynamic or initial topography.

Implements aspect::GeometryModel::Interface< dim >.

§ get_used_boundary_indicators()

template<int dim>

std::set<types::boundary_id> aspect::GeometryModel::TwoMergedBoxes< dim >::get_used_boundary_indicators ( ) const

overridevirtual

Return the set of boundary indicators that are used by this model. This information is used to determine what boundary indicators can be used in the input file.

This box model uses boundary indicators zero through 2*dim+2*(dim-1)-1, with the first two being the faces perpendicular to the x-axis and the next two perpendicular to the y-axis. In 2D, the next two are perpendicular to the x-axis again. In 3D, two sets of two are added for the boundaries parallel to the z-axis.

Implements aspect::GeometryModel::Interface< dim >.

§ get_symbolic_boundary_names_map()

template<int dim>

std::map<std::string,types::boundary_id> aspect::GeometryModel::TwoMergedBoxes< dim >::get_symbolic_boundary_names_map ( ) const

overridevirtual

Return a mapping from symbolic names of each part of the boundary to the corresponding boundary indicator. This allows users to specify names, not just numbers in their input files when describing which parts of the boundary have to satisfy which boundary conditions.

This geometry returns the map {{"left"->0}, {"right"->1}, {"bottom"->2}, {"top"->3}, {"left lithosphere"->4}, {"right lithosphere"->5}} in 2d, and {{"left"->0}, {"right"->1}, {"front"->2}, {"back"->3}, {"bottom"->4}, {"top"->5}, {"left lithosphere"->6}, {"right lithosphere"->7}, {"front lithosphere"->8}, {"back lithosphere"->9}} in 3d.

Reimplemented from aspect::GeometryModel::Interface< dim >.

§ get_periodic_boundary_pairs()

template<int dim>

std::set<std::pair<std::pair<types::boundary_id, types::boundary_id>, unsigned int> > aspect::GeometryModel::TwoMergedBoxes< dim >::get_periodic_boundary_pairs ( ) const

overridevirtual

Return the set of periodic boundaries as described in the input file.

Reimplemented from aspect::GeometryModel::Interface< dim >.

§ adjust_positions_for_periodicity()

template<int dim>

void aspect::GeometryModel::TwoMergedBoxes< dim >::adjust_positions_for_periodicity	(	Point< dim > &	position,
		const ArrayView< Point< dim >> &	connected_positions = `{}`,
		const ArrayView< Tensor< 1, dim >> &	connected_velocities = `{}`
	)		const

overridevirtual

Adjust positions to be inside the domain considering periodic boundary conditions.

This function checks if position is outside the domain and if it could have reasonably crossed a periodic boundary. If so, it will adjust the position as described by the periodic boundary (e.g. a translation in a box, or a rotation in a spherical shell). Afterwards, if it adjusted position, it will also adjust all locations given in connected_positions (if any where given) and all velocities given in connected_velocities in the same way. Adjusting both of these allows to adjust related temporary variables, e.g. the intermediate results of an ordinary differential equation solver that are used to compute differences/directions between points. The reason positions and velocities have to be treated separately is that some geometries have to adjust them differently across a periodic boundary, e.g. a box has to translate positions but not velocities, while a spherical shell has to translate positions (by rotation around the center) and rotate velocities.

This function does not check that the position after the adjustment is inside the domain; to check this is the responsibility of the calling function. A common application of this function are particles that crossed a periodic boundary.

Apply a translation to all points outside of the domain to account for periodicity.

Reimplemented from aspect::GeometryModel::Interface< dim >.

§ has_curved_elements()

template<int dim>

bool aspect::GeometryModel::TwoMergedBoxes< dim >::has_curved_elements ( ) const

overridevirtual

If true, the geometry contains cells with boundaries that are not straight and have a deal.II boundary object attached to it. If the return value is false, certain operation can be optimized.The default implementation of this function will return true.

A box has only straight boundaries and cells, so return false.

Reimplemented from aspect::GeometryModel::Interface< dim >.

§ point_is_in_domain()

template<int dim>

bool aspect::GeometryModel::TwoMergedBoxes< dim >::point_is_in_domain ( const Point< dim > & point ) const

overridevirtual

Return whether the given point lies within the domain specified by the geometry. This function does not take into account initial or dynamic surface topography.

Implements aspect::GeometryModel::Interface< dim >.

§ natural_coordinate_system()

template<int dim>

aspect::Utilities::Coordinates::CoordinateSystem aspect::GeometryModel::TwoMergedBoxes< dim >::natural_coordinate_system ( ) const

overridevirtual

Returns what the natural coordinate system for this geometry model is, which for two merged boxes is Cartesian.

Implements aspect::GeometryModel::Interface< dim >.

§ cartesian_to_natural_coordinates()

template<int dim>

std::array<double,dim> aspect::GeometryModel::TwoMergedBoxes< dim >::cartesian_to_natural_coordinates ( const Point< dim > & position ) const

overridevirtual

Takes the Cartesian points (x,z or x,y,z) and returns standardized coordinates which are most 'natural' to the geometry model. For a box the results is unchanged and is (x,z) in 2d or (x,y,z) in 3d.

Reimplemented from aspect::GeometryModel::Interface< dim >.

§ natural_to_cartesian_coordinates()

template<int dim>

Point<dim> aspect::GeometryModel::TwoMergedBoxes< dim >::natural_to_cartesian_coordinates ( const std::array< double, dim > & position ) const

overridevirtual

Undoes the action of cartesian_to_natural_coordinates, and turns the coordinate system which is most 'natural' to the geometry model into Cartesian coordinates.

Reimplemented from aspect::GeometryModel::Interface< dim >.

§ declare_parameters()

template<int dim>

static void aspect::GeometryModel::TwoMergedBoxes< dim >::declare_parameters ( ParameterHandler & prm )

static

Declare the parameters this class takes through input files.

§ parse_parameters()

template<int dim>

void aspect::GeometryModel::TwoMergedBoxes< dim >::parse_parameters ( ParameterHandler & prm )

overridevirtual

Read the parameters this class declares from the parameter file.

Reimplemented from aspect::GeometryModel::Interface< dim >.

§ set_boundary_indicators()

template<int dim>

void aspect::GeometryModel::TwoMergedBoxes< dim >::set_boundary_indicators ( parallel::distributed::Triangulation< dim > & triangulation ) const

private

Bind boundary indicators to child cells after each mesh refinement round.

Member Data Documentation

§ use_merged_grids

template<int dim>

bool aspect::GeometryModel::TwoMergedBoxes< dim >::use_merged_grids

private

Whether to make the grid by gluing together two boxes, or just use one chunk to make the grid. Using two grids glued together is a safer option, since it forces the boundary conditions to be always applied to the same depth, but one unified grid allows for a more flexible usage of the adaptive refinement.

Definition at line 206 of file two_merged_boxes.h.

§ extents

template<int dim>

Point<dim> aspect::GeometryModel::TwoMergedBoxes< dim >::extents

private

Extent of the whole model domain in x-, y-, and z-direction (in 3d).

Definition at line 211 of file two_merged_boxes.h.

§ lower_extents

template<int dim>

Point<dim> aspect::GeometryModel::TwoMergedBoxes< dim >::lower_extents

private

Extent of the lower box in x-, y-, and z-direction (in 3d).

Definition at line 216 of file two_merged_boxes.h.

§ lower_box_origin

template<int dim>

Point<dim> aspect::GeometryModel::TwoMergedBoxes< dim >::lower_box_origin

private

Origin of the lower box in x, y, and z (in 3d) coordinates.

Definition at line 221 of file two_merged_boxes.h.

§ upper_extents

template<int dim>

Point<dim> aspect::GeometryModel::TwoMergedBoxes< dim >::upper_extents

private

Extent of the upper box in x-, y-, and z-direction (in 3d).

Definition at line 226 of file two_merged_boxes.h.

§ upper_box_origin

template<int dim>

Point<dim> aspect::GeometryModel::TwoMergedBoxes< dim >::upper_box_origin

private

Origin of the upper box in x, y, and z (in 3d) coordinates.

Definition at line 231 of file two_merged_boxes.h.

§ periodic

template<int dim>

bool aspect::GeometryModel::TwoMergedBoxes< dim >::periodic[dim+dim-1]

private

Flag whether the whole domain is periodic in the x-, y-, and z-directions, the x- and y- (in 3d) direction in the lithosphere.

Definition at line 237 of file two_merged_boxes.h.

§ lower_repetitions

template<int dim>

std::array<unsigned int, dim> aspect::GeometryModel::TwoMergedBoxes< dim >::lower_repetitions

private

The number of cells in each coordinate direction for the lower box.

Definition at line 242 of file two_merged_boxes.h.

§ upper_repetitions

template<int dim>

std::array<unsigned int, dim> aspect::GeometryModel::TwoMergedBoxes< dim >::upper_repetitions

private

The number of cells in each coordinate direction for the upper box.

Definition at line 247 of file two_merged_boxes.h.

§ height_lith

template<int dim>

double aspect::GeometryModel::TwoMergedBoxes< dim >::height_lith

private

The height where the lithospheric part of the vertical boundary begins (so in positive z-direction).

Definition at line 253 of file two_merged_boxes.h.

The documentation for this class was generated from the following file:

/home/bob/source/include/aspect/geometry_model/two_merged_boxes.h

Public Member Functions

Static Public Member Functions

Private Member Functions

Private Attributes

Detailed Description

template<int dim> class aspect::GeometryModel::TwoMergedBoxes< dim >

Member Function Documentation

§ create_coarse_mesh()

§ get_extents()

§ get_origin()

§ length_scale()

§ depth()

§ height_above_reference_surface()

§ representative_point()

§ maximal_depth()

§ get_used_boundary_indicators()

§ get_symbolic_boundary_names_map()

§ get_periodic_boundary_pairs()

§ adjust_positions_for_periodicity()

§ has_curved_elements()

§ point_is_in_domain()

§ natural_coordinate_system()

§ cartesian_to_natural_coordinates()

§ natural_to_cartesian_coordinates()

§ declare_parameters()

§ parse_parameters()

§ set_boundary_indicators()

Member Data Documentation

§ use_merged_grids

§ extents

§ lower_extents

§ lower_box_origin

§ upper_extents

§ upper_box_origin

§ periodic

§ lower_repetitions

§ upper_repetitions

§ height_lith

template<int dim>
class aspect::GeometryModel::TwoMergedBoxes< dim >