Inheritance diagram for aspect::GeometryModel::SphericalShell< dim >:

Public Member Functions
	SphericalShell ()=default

void	initialize () override

void	create_coarse_mesh (parallel::distributed::Triangulation< dim > &coarse_grid) const override

double	length_scale () const override

double	depth (const Point< dim > &position) const override

double	height_above_reference_surface (const Point< dim > &position) const override

Point< dim >	representative_point (const double depth) const override

double	maximal_depth () const override

std::set< types::boundary_id >	get_used_boundary_indicators () const override

std::map< std::string, types::boundary_id >	get_symbolic_boundary_names_map () const override

std::set< std::pair< std::pair< types::boundary_id, types::boundary_id >, unsigned int > >	get_periodic_boundary_pairs () const override

void	adjust_positions_for_periodicity (Point< dim > &position, const ArrayView< Point< dim >> &connected_positions={}, const ArrayView< Tensor< 1, dim >> &connected_velocities={}) const override

bool	has_curved_elements () const override

bool	point_is_in_domain (const Point< dim > &point) const override

aspect::Utilities::Coordinates::CoordinateSystem	natural_coordinate_system () const override

std::array< double, dim >	cartesian_to_natural_coordinates (const Point< dim > &position) const override

Point< dim >	natural_to_cartesian_coordinates (const std::array< double, dim > &position) const override

void	parse_parameters (ParameterHandler &prm) override

double	inner_radius () const

double	outer_radius () const

double	opening_angle () const

void	make_periodicity_constraints (const DoFHandler< dim > &dof_handler, AffineConstraints< double > &constraints) const override

Public Member Functions inherited from aspect::GeometryModel::Interface< dim >
virtual	~Interface ()=default

Utilities::NaturalCoordinate< dim >	cartesian_to_other_coordinates (const Point< dim > &position, const Utilities::Coordinates::CoordinateSystem &coordinate_system) const

types::boundary_id	translate_symbolic_boundary_name_to_id (const std::string &name) const

std::vector< types::boundary_id >	translate_symbolic_boundary_names_to_ids (const std::vector< std::string > &names) const

std::string	translate_id_to_symbol_name (const types::boundary_id boundary_id) const

Public Member Functions inherited from aspect::SimulatorAccess< dim >
	SimulatorAccess ()

	SimulatorAccess (const Simulator< dim > &simulator_object)

virtual	~SimulatorAccess ()=default

virtual void	initialize_simulator (const Simulator< dim > &simulator_object)

const Introspection< dim > &	introspection () const

const Simulator< dim > &	get_simulator () const

const Parameters< dim > &	get_parameters () const

SimulatorSignals< dim > &	get_signals () const

MPI_Comm	get_mpi_communicator () const

TimerOutput &	get_computing_timer () const

const ConditionalOStream &	get_pcout () const

double	get_time () const

double	get_timestep () const

double	get_old_timestep () const

unsigned int	get_timestep_number () const

const TimeStepping::Manager< dim > &	get_timestepping_manager () const

unsigned int	get_nonlinear_iteration () const

const parallel::distributed::Triangulation< dim > &	get_triangulation () const

double	get_volume () const

const Mapping< dim > &	get_mapping () const

std::string	get_output_directory () const

bool	include_adiabatic_heating () const

bool	include_latent_heat () const

bool	include_melt_transport () const

int	get_stokes_velocity_degree () const

double	get_adiabatic_surface_temperature () const

double	get_surface_pressure () const

bool	convert_output_to_years () const

unsigned int	get_pre_refinement_step () const

unsigned int	n_compositional_fields () const

double	get_end_time () const

void	get_refinement_criteria (Vector< float > &estimated_error_per_cell) const

void	get_artificial_viscosity (Vector< float > &viscosity_per_cell, const bool skip_interior_cells=false) const

void	get_artificial_viscosity_composition (Vector< float > &viscosity_per_cell, const unsigned int compositional_variable) const

const LinearAlgebra::BlockVector &	get_current_linearization_point () const

const LinearAlgebra::BlockVector &	get_solution () const

const LinearAlgebra::BlockVector &	get_old_solution () const

const LinearAlgebra::BlockVector &	get_old_old_solution () const

const LinearAlgebra::BlockVector &	get_reaction_vector () const

const LinearAlgebra::BlockVector &	get_mesh_velocity () const

const DoFHandler< dim > &	get_dof_handler () const

const FiniteElement< dim > &	get_fe () const

const LinearAlgebra::BlockSparseMatrix &	get_system_matrix () const

const LinearAlgebra::BlockSparseMatrix &	get_system_preconditioner_matrix () const

const MaterialModel::Interface< dim > &	get_material_model () const

const GravityModel::Interface< dim > &	get_gravity_model () const

const InitialTopographyModel::Interface< dim > &	get_initial_topography_model () const

const GeometryModel::Interface< dim > &	get_geometry_model () const

const AdiabaticConditions::Interface< dim > &	get_adiabatic_conditions () const

bool	has_boundary_temperature () const

const BoundaryTemperature::Manager< dim > &	get_boundary_temperature_manager () const

const BoundaryHeatFlux::Interface< dim > &	get_boundary_heat_flux () const

bool	has_boundary_composition () const

const BoundaryComposition::Manager< dim > &	get_boundary_composition_manager () const

const BoundaryTraction::Manager< dim > &	get_boundary_traction_manager () const

std::shared_ptr< const InitialTemperature::Manager< dim > >	get_initial_temperature_manager_pointer () const

const InitialTemperature::Manager< dim > &	get_initial_temperature_manager () const

std::shared_ptr< const InitialComposition::Manager< dim > >	get_initial_composition_manager_pointer () const

const InitialComposition::Manager< dim > &	get_initial_composition_manager () const

const std::set< types::boundary_id > &	get_fixed_temperature_boundary_indicators () const

const std::set< types::boundary_id > &	get_fixed_heat_flux_boundary_indicators () const

const std::set< types::boundary_id > &	get_fixed_composition_boundary_indicators () const

const std::set< types::boundary_id > &	get_mesh_deformation_boundary_indicators () const

const BoundaryVelocity::Manager< dim > &	get_boundary_velocity_manager () const

const HeatingModel::Manager< dim > &	get_heating_model_manager () const

const MeshRefinement::Manager< dim > &	get_mesh_refinement_manager () const

const MeltHandler< dim > &	get_melt_handler () const

const VolumeOfFluidHandler< dim > &	get_volume_of_fluid_handler () const

const NewtonHandler< dim > &	get_newton_handler () const

const MeshDeformation::MeshDeformationHandler< dim > &	get_mesh_deformation_handler () const

const LateralAveraging< dim > &	get_lateral_averaging () const

const AffineConstraints< double > &	get_current_constraints () const

bool	simulator_is_past_initialization () const

double	get_pressure_scaling () const

bool	pressure_rhs_needs_compatibility_modification () const

bool	model_has_prescribed_stokes_solution () const

TableHandler &	get_statistics_object () const

const Postprocess::Manager< dim > &	get_postprocess_manager () const

const Particle::World< dim > &	get_particle_world () const

Particle::World< dim > &	get_particle_world ()

bool	is_stokes_matrix_free ()

const StokesMatrixFreeHandler< dim > &	get_stokes_matrix_free () const

RotationProperties< dim >	compute_net_angular_momentum (const bool use_constant_density, const LinearAlgebra::BlockVector &solution, const bool limit_to_top_faces=false) const

Static Public Member Functions
static void	declare_parameters (ParameterHandler &prm)

Static Public Member Functions inherited from aspect::GeometryModel::Interface< dim >
static void	declare_parameters (ParameterHandler &prm)

Static Public Member Functions inherited from aspect::SimulatorAccess< dim >
static void	get_composition_values_at_q_point (const std::vector< std::vector< double >> &composition_values, const unsigned int q, std::vector< double > &composition_values_at_q_point)

Private Types
enum	CustomMeshRadialSubdivision { none, list, slices }

Private Member Functions
void	set_manifold_ids (parallel::distributed::Triangulation< dim > &triangulation) const

Private Attributes
enum aspect::GeometryModel::SphericalShell::CustomMeshRadialSubdivision	custom_mesh

unsigned int	initial_lateral_refinement

unsigned int	n_slices

std::vector< double >	R_values_list

double	R0

double	R1

double	phi

int	n_cells_along_circumference

bool	periodic

std::unique_ptr< const internal::SphericalManifoldWithTopography< dim > >	manifold

Static Private Attributes
static const types::manifold_id	my_manifold_id = 99

Detailed Description

template<int dim>
class aspect::GeometryModel::SphericalShell< dim >

A class that describes the geometry as a spherical shell. To be more precise, at least in 2d this class can also simulate just a sector of the spherical shell geometry, in particular a half ring and a quarter ring.

The parameters that describe this geometry and that are read from the input file are the inner and outer radii of the shell and the opening angle of the section of the shell we want to build.

Definition at line 172 of file spherical_shell.h.

Member Enumeration Documentation

§ CustomMeshRadialSubdivision

template<int dim>

enum aspect::GeometryModel::SphericalShell::CustomMeshRadialSubdivision

private

Specify the radial subdivision of the spherical shell mesh.

Enumerator
none
list
slices

Definition at line 372 of file spherical_shell.h.

Constructor & Destructor Documentation

§ SphericalShell()

template<int dim>

aspect::GeometryModel::SphericalShell< dim >::SphericalShell ( )

default

Constructor.

Member Function Documentation

§ initialize()

template<int dim>

void aspect::GeometryModel::SphericalShell< dim >::initialize ( )

overridevirtual

Initialization function. This function is called once at the beginning of the program after parse_parameters is run and after the SimulatorAccess (if applicable) is initialized. This function calls the initialize function of the manifold with a pointer to the initial topography model obtained from SimulatorAccess.

Reimplemented from aspect::GeometryModel::Interface< dim >.

§ create_coarse_mesh()

template<int dim>

void aspect::GeometryModel::SphericalShell< dim >::create_coarse_mesh ( parallel::distributed::Triangulation< dim > & coarse_grid ) const

overridevirtual

Generate a coarse mesh for the geometry described by this class.

Implements aspect::GeometryModel::Interface< dim >.

§ length_scale()

template<int dim>

double aspect::GeometryModel::SphericalShell< dim >::length_scale ( ) const

overridevirtual

Return the typical length scale one would expect of features in this geometry, assuming realistic parameters.

As discussed in the step-32 tutorial program, an appropriate length scale for this geometry is 10km, so we return \(10^4\) here.

Implements aspect::GeometryModel::Interface< dim >.

§ depth()

template<int dim>

double aspect::GeometryModel::SphericalShell< dim >::depth ( const Point< dim > & position ) const

overridevirtual

Return the depth that corresponds to the given position. The documentation of the base class (see GeometryModel::Interface::depth()) describes in detail how "depth" is interpreted in general.

Computing a depth requires a geometry model to define a "vertical" direction. The current class considers the radial vector away from the origin as vertical and considers the "outer" boundary as the "surface". In almost all cases one will use a gravity model that also matches these definitions.

Implements aspect::GeometryModel::Interface< dim >.

§ height_above_reference_surface()

template<int dim>

double aspect::GeometryModel::SphericalShell< dim >::height_above_reference_surface ( const Point< dim > & position ) const

overridevirtual

Return the height of the given position relative to the outer radius of the shell.

Implements aspect::GeometryModel::Interface< dim >.

§ representative_point()

template<int dim>

Point<dim> aspect::GeometryModel::SphericalShell< dim >::representative_point ( const double depth ) const

overridevirtual

Returns a representative point for a given depth. Such a point must lie inside the domain for sure (assuming the given depth is valid), but it is not important where exactly in the domain it is. A good choice would be on a middle axis, for example.

The function is used, for example, in computing an initial adiabatic profile. For this, we need to be able to query the density as a function of (adiabatic) pressure and temperature. However, the functions returning the density from the material model also depend on location. Since we are interested only in computing a depth-dependent adiabatic profile without lateral variation, we need to be able to query the density at "representative points" at given depths, without caring too much where exactly that is – but at points that we know for sure are inside the domain.

Implements aspect::GeometryModel::Interface< dim >.

§ maximal_depth()

template<int dim>

double aspect::GeometryModel::SphericalShell< dim >::maximal_depth ( ) const

overridevirtual

Returns the maximal depth of this geometry. For a definition of how "depth" is to be interpreted, see the documentation of the depth() member function. In particular, the maximal depth of a geometry model only represents the depth computed with regard to some reference configuration, ignoring any dynamic or initial topography.

Implements aspect::GeometryModel::Interface< dim >.

§ get_used_boundary_indicators()

template<int dim>

std::set<types::boundary_id> aspect::GeometryModel::SphericalShell< dim >::get_used_boundary_indicators ( ) const

overridevirtual

Return the set of boundary indicators that are used by this model. This information is used to determine what boundary indicators can be used in the input file.

The spherical shell may be generated as per in the original code (with respect to the inner and outer radius, and an initial number of cells along circumference) or following a custom mesh scheme: list of radial values or number of slices. A surface mesh is first generated and refined as desired, before it is extruded radially. A list of radial values subdivides the spherical shell at specified radii. The number of slices subdivides the spherical shell into N slices of equal thickness. The custom spherical shell only works with an opening angle of 360 degrees.

The spherical shell model uses boundary indicators zero and one, with zero corresponding to the inner surface and one corresponding to the outer surface. In 2d, if the geometry is only a slice of the shell, boundary indicators 2 and 3 indicate the left and right radial bounding lines.

Implements aspect::GeometryModel::Interface< dim >.

§ get_symbolic_boundary_names_map()

template<int dim>

std::map<std::string,types::boundary_id> aspect::GeometryModel::SphericalShell< dim >::get_symbolic_boundary_names_map ( ) const

overridevirtual

Return symbolic names for all boundary components. Their names are described in the documentation of this plugin, at the bottom of the .cc file.

Reimplemented from aspect::GeometryModel::Interface< dim >.

§ get_periodic_boundary_pairs()

template<int dim>

std::set<std::pair<std::pair<types::boundary_id, types::boundary_id>, unsigned int> > aspect::GeometryModel::SphericalShell< dim >::get_periodic_boundary_pairs ( ) const

overridevirtual

Return the set of periodic boundaries as described in the input file.

Reimplemented from aspect::GeometryModel::Interface< dim >.

§ adjust_positions_for_periodicity()

template<int dim>

void aspect::GeometryModel::SphericalShell< dim >::adjust_positions_for_periodicity	(	Point< dim > &	position,
		const ArrayView< Point< dim >> &	connected_positions = `{}`,
		const ArrayView< Tensor< 1, dim >> &	connected_velocities = `{}`
	)		const

overridevirtual

Adjust positions to be inside the domain considering periodic boundary conditions.

This function checks if position is outside the domain and if it could have reasonably crossed a periodic boundary. If so, it will adjust the position as described by the periodic boundary (e.g. a translation in a box, or a rotation in a spherical shell). Afterwards, if it adjusted position, it will also adjust all locations given in connected_positions (if any where given) and all velocities given in connected_velocities in the same way. Adjusting both of these allows to adjust related temporary variables, e.g. the intermediate results of an ordinary differential equation solver that are used to compute differences/directions between points. The reason positions and velocities have to be treated separately is that some geometries have to adjust them differently across a periodic boundary, e.g. a box has to translate positions but not velocities, while a spherical shell has to translate positions (by rotation around the center) and rotate velocities.

This function does not check that the position after the adjustment is inside the domain; to check this is the responsibility of the calling function. A common application of this function are particles that crossed a periodic boundary.

Apply a rotation to all points outside of the domain to account for periodicity.

Reimplemented from aspect::GeometryModel::Interface< dim >.

§ has_curved_elements()

template<int dim>

bool aspect::GeometryModel::SphericalShell< dim >::has_curved_elements ( ) const

overridevirtual

If true, the geometry contains cells with boundaries that are not straight and have a deal.II boundary object attached to it. If the return value is false, certain operation can be optimized.The default implementation of this function will return true.

Return true because we have a curved boundary.

Reimplemented from aspect::GeometryModel::Interface< dim >.

§ point_is_in_domain()

template<int dim>

bool aspect::GeometryModel::SphericalShell< dim >::point_is_in_domain ( const Point< dim > & point ) const

overridevirtual

Return whether the given point lies within the domain specified by the geometry. This function does not take into account initial or dynamic surface topography.

Implements aspect::GeometryModel::Interface< dim >.

§ natural_coordinate_system()

template<int dim>

aspect::Utilities::Coordinates::CoordinateSystem aspect::GeometryModel::SphericalShell< dim >::natural_coordinate_system ( ) const

overridevirtual

Returns what the natural coordinate system for this geometry model is, which for a spherical shell is Spherical.

Implements aspect::GeometryModel::Interface< dim >.

§ cartesian_to_natural_coordinates()

template<int dim>

std::array<double,dim> aspect::GeometryModel::SphericalShell< dim >::cartesian_to_natural_coordinates ( const Point< dim > & position ) const

overridevirtual

Takes the Cartesian points (x,z or x,y,z) and returns standardized coordinates which are most 'natural' to the geometry model. For a spherical shell this is (radius, longitude) in 2d and (radius, longitude, latitude) in 3d.

Reimplemented from aspect::GeometryModel::Interface< dim >.

§ natural_to_cartesian_coordinates()

template<int dim>

Point<dim> aspect::GeometryModel::SphericalShell< dim >::natural_to_cartesian_coordinates ( const std::array< double, dim > & position ) const

overridevirtual

Undoes the action of cartesian_to_natural_coordinates, and turns the coordinate system which is most 'natural' to the geometry model into Cartesian coordinates.

Reimplemented from aspect::GeometryModel::Interface< dim >.

§ declare_parameters()

template<int dim>

static void aspect::GeometryModel::SphericalShell< dim >::declare_parameters ( ParameterHandler & prm )

static

Declare the parameters this class takes through input files. The default implementation of this function does not describe any parameters. Consequently, derived classes do not have to overload this function if they do not take any runtime parameters.

§ parse_parameters()

template<int dim>

void aspect::GeometryModel::SphericalShell< dim >::parse_parameters ( ParameterHandler & prm )

overridevirtual

Read the parameters this class declares from the parameter file. The default implementation of this function does not read any parameters. Consequently, derived classes do not have to overload this function if they do not take any runtime parameters.

Reimplemented from aspect::GeometryModel::Interface< dim >.

§ inner_radius()

template<int dim>

double aspect::GeometryModel::SphericalShell< dim >::inner_radius ( ) const

Return the inner radius of the shell.

§ outer_radius()

template<int dim>

double aspect::GeometryModel::SphericalShell< dim >::outer_radius ( ) const

Return the outer radius of the shell.

§ opening_angle()

template<int dim>

double aspect::GeometryModel::SphericalShell< dim >::opening_angle ( ) const

Return the opening angle of the shell sector.

§ make_periodicity_constraints()

template<int dim>

void aspect::GeometryModel::SphericalShell< dim >::make_periodicity_constraints	(	const DoFHandler< dim > &	dof_handler,
		AffineConstraints< double > &	constraints
	)		const

overridevirtual

Collects periodic boundaries constraints for the given geometry, which will be added to the existing constraints.

Reimplemented from aspect::GeometryModel::Interface< dim >.

§ set_manifold_ids()

template<int dim>

void aspect::GeometryModel::SphericalShell< dim >::set_manifold_ids ( parallel::distributed::Triangulation< dim > & triangulation ) const

private

Set the manifold ids on all cells (also boundaries) before refinement to generate well shaped cells.

Member Data Documentation

§ custom_mesh

template<int dim>

enum aspect::GeometryModel::SphericalShell::CustomMeshRadialSubdivision aspect::GeometryModel::SphericalShell< dim >::custom_mesh

private

§ initial_lateral_refinement

template<int dim>

unsigned int aspect::GeometryModel::SphericalShell< dim >::initial_lateral_refinement

private

Initial surface refinement for the custom mesh cases.

Definition at line 382 of file spherical_shell.h.

§ n_slices

template<int dim>

unsigned int aspect::GeometryModel::SphericalShell< dim >::n_slices

private

Initial surface refinement for the custom mesh cases.

Definition at line 387 of file spherical_shell.h.

§ R_values_list

template<int dim>

std::vector<double> aspect::GeometryModel::SphericalShell< dim >::R_values_list

private

List of radial values for the list custom mesh.

Definition at line 392 of file spherical_shell.h.

§ R0

template<int dim>

double aspect::GeometryModel::SphericalShell< dim >::R0

private

Inner and outer radii of the spherical shell.

Definition at line 397 of file spherical_shell.h.

§ R1

template<int dim>

double aspect::GeometryModel::SphericalShell< dim >::R1

private

Definition at line 397 of file spherical_shell.h.

§ phi

template<int dim>

double aspect::GeometryModel::SphericalShell< dim >::phi

private

Opening angle of the section of the shell that we simulate.

Definition at line 402 of file spherical_shell.h.

§ n_cells_along_circumference

template<int dim>

int aspect::GeometryModel::SphericalShell< dim >::n_cells_along_circumference

private

Number of tangential mesh cells in the initial, coarse mesh.

Definition at line 407 of file spherical_shell.h.

§ periodic

template<int dim>

bool aspect::GeometryModel::SphericalShell< dim >::periodic

private

Flag whether the 2D quarter shell is periodic in phi.

Definition at line 418 of file spherical_shell.h.

§ manifold

template<int dim>

std::unique_ptr<const internal::SphericalManifoldWithTopography<dim> > aspect::GeometryModel::SphericalShell< dim >::manifold

private

An object that describes the geometry. This pointer is initialized in the initialize() function, and serves as the manifold object that the triangulation is later given in create_coarse_mesh() where the triangulation clones it.

The object is marked as 'const' to make it clear that it should not be modified once created. That is because the triangulation copies it, and modifying the current object will not have any impact on the manifold used by the triangulation.

Definition at line 431 of file spherical_shell.h.

§ my_manifold_id

template<int dim>

const types::manifold_id aspect::GeometryModel::SphericalShell< dim >::my_manifold_id = 99

staticprivate

Give a symbolic name to the manifold id to be used by this class.

Definition at line 436 of file spherical_shell.h.

The documentation for this class was generated from the following file:

/home/bob/source/include/aspect/geometry_model/spherical_shell.h

Public Member Functions

Static Public Member Functions

Private Types

Private Member Functions

Private Attributes

Static Private Attributes

Detailed Description

template<int dim> class aspect::GeometryModel::SphericalShell< dim >

Member Enumeration Documentation

§ CustomMeshRadialSubdivision

Constructor & Destructor Documentation

§ SphericalShell()

Member Function Documentation

§ initialize()

§ create_coarse_mesh()

§ length_scale()

§ depth()

§ height_above_reference_surface()

§ representative_point()

§ maximal_depth()

§ get_used_boundary_indicators()

§ get_symbolic_boundary_names_map()

§ get_periodic_boundary_pairs()

§ adjust_positions_for_periodicity()

§ has_curved_elements()

§ point_is_in_domain()

§ natural_coordinate_system()

§ cartesian_to_natural_coordinates()

§ natural_to_cartesian_coordinates()

§ declare_parameters()

§ parse_parameters()

§ inner_radius()

§ outer_radius()

§ opening_angle()

§ make_periodicity_constraints()

§ set_manifold_ids()

Member Data Documentation

§ custom_mesh

§ initial_lateral_refinement

§ n_slices

§ R_values_list

§ R0

§ R1

§ phi

§ n_cells_along_circumference

§ periodic

§ manifold

§ my_manifold_id

template<int dim>
class aspect::GeometryModel::SphericalShell< dim >